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yopK [2019-02-20 14:41:43]
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yopK [2019-02-20 14:41:43]

viral quorum sensor, phage SPbeta lytic/lysogenic regulator
locus
BSU20860
pI
5.86
mw
45.16 kDa
protein length
386 aa Sequence Blast
gene length
1161 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.2|SP-beta prophage]

    • Gene

    Coordinates
    2,208,994 → 2,210,154

    The protein

    Structure

  • Apo-form: [PDB|5XYB] ([Pubmed|30224798]), [PDB|5ZW5] ([Pubmed|30323253]), [PDB|6IPX] ([Pubmed|30421358]), [PDB|6HP3]
  • Complexed with AimP ([protein|20735BFECA52826F0F4D55843EEE7798F414993C|AimP])): [PDB|5Y24] ([Pubmed|30224798]), [PDB|5ZW6] ([Pubmed|30323253]), [PDB|6IM4] ([Pubmed|30421358])
  • Complexed with DNA: [PDB|6HP7]

    • Biological materials

    Mutant

  • BKE20860 (Δ[gene|CAE7D8E45DA7CDE99D3EA114DF7E368A0A126389|aimR]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE20860 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTATTTCCCCTCATTTCT, downstream forward: _UP4_TAAAGGAGGTGAGACAATGA
  • BKK20860 (Δ[gene|CAE7D8E45DA7CDE99D3EA114DF7E368A0A126389|aimR]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK20860 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTATTTCCCCTCATTTCT, downstream forward: _UP4_TAAAGGAGGTGAGACAATGA

    • References

    Research papers

  • 30323253,30224798,30421358